Introductory Overview
CYP2D6 (Cytochrome P450, Family 2, Subfamily D, Polypeptide 6) is one of 57 cytochrome P450s, a class of metabolic enzymes found primarily in human liver cells [1].
Despite its low hepatic abundance (1–5 % of the CYP liver content), CYP2D6 accounts at least in part for the metabolism of up to 25 % of commonly prescribed drugs such as analgesics, antiarrhythmics, antidepressants, antipsychotics and others [2-4].
Major Substrates and Inhibitors for CYP2D6
Type of Substrate | Main Substrates |
---|---|
Analgesics (Opiates) | Codeine, Oxycodone, Tramadol |
Antiarrythmics | Flecainide, Mexiletine, Propafenone |
Antidepressants (TCA, SSRIs) | Amitriptyline, Clomipramine, Desipramine, Duloxetine, Fluoxetine, Imipramine, Paroxetine, Venlafaxine |
Antipsychotics | Aripiprazole, Haloperidol, Risperidone, Thioridazine |
Beta Blockers | Carvedilol, S-metoprolol, Timolol |
Others | Dextromethorphan, Ondansetron, Tamoxifen |
Type of Inhibitor | Main Inhibitors |
---|---|
Strong Inhibitor | Bupropion, Fluoxetine, Quinidine, Paroxetine |
Moderate Inhibitor | Duloxetine |
Weak Inhibitor | Amiodarone, Cimetidine |
Others | Chlorpheniramine, Clomipramine, Doxepin, Haloperidol, Methadone, Ritonavir |
The highly polymorphic nature of the CYP2D6 gene is a great source of variability in CYP2D6 drug substrates responses. The current phenotypic classification of CYP2D6 includes poor, intermediate, extensive or ultra-rapid metabolizers of CYP2D6 drug substrates [7]:
- Poor metabolizers have a low or no enzyme activity and are predicted by the presence of 2 non-functional alleles (activity score 0).
- Intermediate metabolizers have reduced enzymatic activity and are predicted by the presence of two reduced activity alleles, or one reduced function allele et one non-functional allele, or one functional allele and one non-functional allele (activity score 0.5-1). Based on the specific context, the phenotype may overlap with a poor metabolizer or an extensive metabolizer.
- Extensive metabolizers have normal enzymatic activity and are predicted by the presence of 2 functional alleles, or one functional allele and one reduced function allele (activity score 1-2).
- Ultra-rapid metabolizers have increased enzymatic activity, and are predicted by the presence of more than 2 functional alleles (activity score >2).
Percentage of CYP2D6 phenotypes in Caucasians
It has been estimated that predictive CYP2D6 genotyping could be beneficial for treatment of about 30–40% of CYP2D6 drug substrates (7–10% of all drugs clinically used) [7].
Prescription Guidance
Clinical Indication
General Indications
- Testing of patients subject to / with a family history of adverse drug reaction or therapeutic failure when treated with substrates of CYP2D6.
- Preemptive screening for the identification of patients at risk of treatment toxicity or inefficacy when being prescribed substrates of CYP2D6.
- Prediction of response to CYP2D6 substrates in case of co-medications with CYP2D6 inhibitors.
For Codeine treatment
- Testing of young children prior prescription of codeine for pain management
- Testing of breastfeeding mothers prior prescription of codeine for postpartum pain
- Testing of children and adults who continue to experience pain despite high doses of codeine
- Preemptive screening for the identification of patients at risk of treatment toxicity or inefficacy when being prescribed substrates of CYP2D6 [8-9].
For Tamoxifen treatment
- Testing of potential poor outcome of Tamoxifen, especially in postmenopausal women affected by breast cancer positive for estrogen receptors [10].
Risk Management & Benefits
The identification of poor, intermediate and ultra-rapid metabolizers is effective at reducing the risk of adverse drug reaction or poor treatment outcomes. It help the prescribing physician to make informed decision regarding drug dose and selection.
For Codeine
CYP2D6 testing allows identification of individuals at risk for codeine adverse drug reaction (over sedation, respiratory depression) and codeine non-responders.
- CYP2D6 ultra-rapid metabolizers should avoid codeine and receive analgesics which are not substrates of CYP2D6.
- CYP2D6 poor metabolizers will have no analgesic benefit and should be prescribed with a different type of analgesics [8-9].
For Tamoxifen
CYP2D6 testing allows the detection of poor metabolizers who are unlikely going to benefit from Tamoxifen treatment. Alternate treatment such as aromatase inhibitors should be prescribed in such cases [10].
Test Characteristics
Panel Composition
Our assay identifies the most common and relevant CYP2D6 variants:
CYP2D6 Alleles | Associated SNPs – Del/Dup | Type of Allele |
---|---|---|
*3 | rs35742686 | Non-functional |
*4 | rs3892097 | Non-functional |
*5 | Deletion | Non-functional |
*6 | rs5030655 | Non-functional |
*7 | rs5030867 | Non-functional |
*8 | rs5030865 | Non-functional |
*9 | rs5030656 | Reduced-function |
*10 | rs1065852 | Reduced-function |
*11 | rs5030863 | Non-functional |
*17 | rs28371706 | Reduced-function |
*29 | rs59421388 | Reduced-function |
*41 | rs28371725 | Reduced-function |
*xN | Duplication | Duplication |
Technical Details
Methodology
Multiplex polymerase chain reaction (PCR) followed by hybridization on custom-designed array (CE-IVD).
- Analytical sensitivity: >99%
- Analytical specificity: >99%
TAT
One week on average. Urgent testing is available upon request.
References
- Ingelman-Sundberg M. Pharmacogenetics of cytochrome P450 and its applications in drug therapy: the past, present and future. Trends Pharmacol Sci. 2004 Apr;25(4):193-200. PubMed PMID: 15063083.
- Evans WE, Relling MV. Pharmacogenomics: translating functional genomics into rational therapeutics. Science. 1999 Oct 15;286(5439):487-91. PubMed PMID: 10521338.
- Eichelbaum M, Ingelman-Sundberg M, Evans WE. Pharmacogenomics and individualized drug therapy. Annu Rev Med. 2006;57:119-37. PubMed PMID: 16409140.
- Zanger UM, Raimundo S, Eichelbaum M. Cytochrome P450 2D6: overview and update on pharmacology, genetics, biochemistry. Naunyn Schmiedebergs Arch Pharmacol. 2004 Jan;369(1):23-37. PubMed PMID: 14618296.
- Rendic S. Summary of information on human CYP enzymes: human P450 metabolism data. Drug Metab Rev. 2002 Feb-May;34(1-2):83-448. PubMed PMID:11996015.
- Flockhart DA. Drug Interactions: Cytochrome P450 Drug Interaction Table. Indiana University School of Medicine (2007). http://medicine.iupui.edu/clinpharm/ddis/table.aspx. Accessed in 2014.
- Ingelman-Sundberg M. Genetic polymorphisms of cytochrome P450 2D6 (CYP2D6): clinical consequences, evolutionary aspects and functional diversity. Pharmacogenomics J. 2005;5(1):6-13. PubMed PMID: 15492763.
- Madadi P, Amstutz U, Rieder M, Ito S, Fung V, Hwang S, Turgeon J, Michaud V, Koren G, Carleton BC; CPNDS Clinical Recommendations Group. Clinical practice guideline: CYP2D6 genotyping for safe and efficacious codeine therapy. J Popul Ther Clin Pharmacol. 2013;20(3):e369-96. PubMed PMID: 24214521.
- Crews KR, Gaedigk A, Dunnenberger HM, Leeder JS, Klein TE, Caudle KE, Haidar CE, Shen DD, Callaghan JT, Sadhasivam S, Prows CA, Kharasch ED, Skaar TC; Clinical Pharmacogenetics Implementation Consortium. Clinical Pharmacogenetics Implementation Consortium guidelines for cytochrome P450 2D6 genotype and codeine therapy: 2014 update. Clin Pharmacol Ther. 2014 Apr;95(4):376-82. Review. PubMed PMID: 24458010.
- Becquemont L, Alfirevic A, Amstutz U, Brauch H, Jacqz-Aigrain E, Laurent-Puig P, Molina MA, Niemi M, Schwab M, Somogyi AA, Thervet E, Maitland-van der Zee AH, van Kuilenburg AB, van Schaik RH, Verstuyft C, Wadelius M, Daly AK. Practical recommendations for pharmacogenomics-based prescription: 2010 ESF-UB Conference on Pharmacogenetics and Pharmacogenomics. Pharmacogenomics. 2011 Jan;12(1):113-24. PubMed PMID: 21174626.
- Goetz MP, Suman VJ, Hoskin TL, Gnant M, Filipits M, Safgren SL, Kuffel M, Jakesz R, Rudas M, Greil R, Dietze O, Lang A, Offner F, Reynolds CA, Weinshilboum RM, Ames MM, Ingle JN. CYP2D6 metabolism and patient outcome in the Austrian Breast and Colorectal Cancer Study Group trial (ABCSG) 8. Clin Cancer Res. 2013 Jan 15;19(2):500-7. doi: 10.1158/1078-0432.CCR-12-2153. Epub 2012 Dec 4. PubMed PMID: 23213055